Cleanup old stuff

setup.sh

@@ -1,5 +1,7 @@
-#!/bin/bash -e
-cp -r hooks .git/hooks
+#!/bin/bash
+set -euo pipefail
+
+git config core.hooksPath ./hooks
 
 # BERTopic
 cd bertopic
@@ -19,3 +21,5 @@ pip install -r requirements.txt
 
 deactivate
 cd ../
+
+./convert_jupytext.sh nb